TY  - JOUR
AU  - Klionsky, Daniel J.
AU  - Abdel-Aziz, Amal Kamal
AU  - Dini, Luciana
AU  - Dinić, Miroslav
PY  - 2021
UR  - https://imagine.imgge.bg.ac.rs/handle/123456789/1422
AB  - In 2008, we published the first set of guidelines for standardizing research in autophagy. Since then, this topic has received increasing attention, and many scientists have entered the field. Our knowledge base and relevant new technologies have also been expanding. Thus, it is important to formulate on a regular basis updated guidelines for monitoring autophagy in different organisms. Despite numerous reviews, there continues to be confusion regarding acceptable methods to evaluate autophagy, especially in multicellular eukaryotes. Here, we present a set of guidelines for investigators to select and interpret methods to examine autophagy and related processes, and for reviewers to provide realistic and reasonable critiques of reports that are focused on these processes. These guidelines are not meant to be a dogmatic set of rules, because the appropriateness of any assay largely depends on the question being asked and the system being used. Moreover, no individual assay is perfect for every situation, calling for the use of multiple techniques to properly monitor autophagy in each experimental setting. Finally, several core components of the autophagy machinery have been implicated in distinct autophagic processes (canonical and noncanonical autophagy), implying that genetic approaches to block autophagy should rely on targeting two or more autophagy-related genes that ideally participate in distinct steps of the pathway. Along similar lines, because multiple proteins involved in autophagy also regulate other cellular pathways including apoptosis, not all of them can be used as a specific marker for bona fide autophagic responses. Here, we critically discuss current methods of assessing autophagy and the information they can, or cannot, provide. Our ultimate goal is to encourage intellectual and technical innovation in the field.
PB  - Taylor & Francis Inc, Philadelphia
T2  - Autophagy
T1  - Guidelines for the use and interpretation of assays for monitoring autophagy (4th edition)
EP  - 382
IS  - 1
SP  - 1
VL  - 17
DO  - 10.1080/15548627.2020.1797280
ER  - 

@article{
author = "Klionsky, Daniel J. and Abdel-Aziz, Amal Kamal and Dini, Luciana and Dinić, Miroslav",
year = "2021",
abstract = "In 2008, we published the first set of guidelines for standardizing research in autophagy. Since then, this topic has received increasing attention, and many scientists have entered the field. Our knowledge base and relevant new technologies have also been expanding. Thus, it is important to formulate on a regular basis updated guidelines for monitoring autophagy in different organisms. Despite numerous reviews, there continues to be confusion regarding acceptable methods to evaluate autophagy, especially in multicellular eukaryotes. Here, we present a set of guidelines for investigators to select and interpret methods to examine autophagy and related processes, and for reviewers to provide realistic and reasonable critiques of reports that are focused on these processes. These guidelines are not meant to be a dogmatic set of rules, because the appropriateness of any assay largely depends on the question being asked and the system being used. Moreover, no individual assay is perfect for every situation, calling for the use of multiple techniques to properly monitor autophagy in each experimental setting. Finally, several core components of the autophagy machinery have been implicated in distinct autophagic processes (canonical and noncanonical autophagy), implying that genetic approaches to block autophagy should rely on targeting two or more autophagy-related genes that ideally participate in distinct steps of the pathway. Along similar lines, because multiple proteins involved in autophagy also regulate other cellular pathways including apoptosis, not all of them can be used as a specific marker for bona fide autophagic responses. Here, we critically discuss current methods of assessing autophagy and the information they can, or cannot, provide. Our ultimate goal is to encourage intellectual and technical innovation in the field.",
publisher = "Taylor & Francis Inc, Philadelphia",
journal = "Autophagy",
title = "Guidelines for the use and interpretation of assays for monitoring autophagy (4th edition)",
pages = "382-1",
number = "1",
volume = "17",
doi = "10.1080/15548627.2020.1797280"
}

Klionsky, D. J., Abdel-Aziz, A. K., Dini, L.,& Dinić, M.. (2021). Guidelines for the use and interpretation of assays for monitoring autophagy (4th edition). in Autophagy
Taylor & Francis Inc, Philadelphia., 17(1), 1-382.
https://doi.org/10.1080/15548627.2020.1797280

Klionsky DJ, Abdel-Aziz AK, Dini L, Dinić M. Guidelines for the use and interpretation of assays for monitoring autophagy (4th edition). in Autophagy. 2021;17(1):1-382.
doi:10.1080/15548627.2020.1797280 .

Klionsky, Daniel J., Abdel-Aziz, Amal Kamal, Dini, Luciana, Dinić, Miroslav, "Guidelines for the use and interpretation of assays for monitoring autophagy (4th edition)" in Autophagy, 17, no. 1 (2021):1-382,
https://doi.org/10.1080/15548627.2020.1797280 . .

TY  - JOUR
AU  - Klionsky, Daniel J.
AU  - Abdelmohsen, Kotb
AU  - Bumbasirević, Vladimir
AU  - Deretić, Vojo
AU  - Dikić, Ivan
AU  - Glavić, Alvaro
AU  - Harhaji-Trajković, Ljubica
AU  - Isaković, Aleksandra J.
AU  - Kravić-Stevović, Tamara
AU  - Ljujić, Mila
AU  - Marković, Ivanka
AU  - Polčić, Peter
AU  - Topisirović, Ivan
AU  - Trajković, Vladimir
PY  - 2016
UR  - https://imagine.imgge.bg.ac.rs/handle/123456789/985
PB  - Taylor & Francis Inc, Philadelphia
T2  - Autophagy
T1  - Guidelines for the use and interpretation of assays for monitoring autophagy (3rd edition)
EP  - 222
IS  - 1
SP  - 1
VL  - 12
DO  - 10.1080/15548627.2015.1100356
ER  - 

@article{
author = "Klionsky, Daniel J. and Abdelmohsen, Kotb and Bumbasirević, Vladimir and Deretić, Vojo and Dikić, Ivan and Glavić, Alvaro and Harhaji-Trajković, Ljubica and Isaković, Aleksandra J. and Kravić-Stevović, Tamara and Ljujić, Mila and Marković, Ivanka and Polčić, Peter and Topisirović, Ivan and Trajković, Vladimir",
year = "2016",
publisher = "Taylor & Francis Inc, Philadelphia",
journal = "Autophagy",
title = "Guidelines for the use and interpretation of assays for monitoring autophagy (3rd edition)",
pages = "222-1",
number = "1",
volume = "12",
doi = "10.1080/15548627.2015.1100356"
}

Klionsky, D. J., Abdelmohsen, K., Bumbasirević, V., Deretić, V., Dikić, I., Glavić, A., Harhaji-Trajković, L., Isaković, A. J., Kravić-Stevović, T., Ljujić, M., Marković, I., Polčić, P., Topisirović, I.,& Trajković, V.. (2016). Guidelines for the use and interpretation of assays for monitoring autophagy (3rd edition). in Autophagy
Taylor & Francis Inc, Philadelphia., 12(1), 1-222.
https://doi.org/10.1080/15548627.2015.1100356

Klionsky DJ, Abdelmohsen K, Bumbasirević V, Deretić V, Dikić I, Glavić A, Harhaji-Trajković L, Isaković AJ, Kravić-Stevović T, Ljujić M, Marković I, Polčić P, Topisirović I, Trajković V. Guidelines for the use and interpretation of assays for monitoring autophagy (3rd edition). in Autophagy. 2016;12(1):1-222.
doi:10.1080/15548627.2015.1100356 .

Klionsky, Daniel J., Abdelmohsen, Kotb, Bumbasirević, Vladimir, Deretić, Vojo, Dikić, Ivan, Glavić, Alvaro, Harhaji-Trajković, Ljubica, Isaković, Aleksandra J., Kravić-Stevović, Tamara, Ljujić, Mila, Marković, Ivanka, Polčić, Peter, Topisirović, Ivan, Trajković, Vladimir, "Guidelines for the use and interpretation of assays for monitoring autophagy (3rd edition)" in Autophagy, 12, no. 1 (2016):1-222,
https://doi.org/10.1080/15548627.2015.1100356 . .