Identification and profiling of conserved microRNAs in different developmental stages of crown imperial (Fritillaria imperialis L.) using high-throughput sequencing
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Ahmadi-Teshniz, FereshtehShiran, Behrouz
Mousavi-Fard, Sadegh
Fallahi, Hossein
Banović Đeri, Bojana
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Background Novel strategies for improvement of ornamental plants and their properties relay on miRNA control of differential plant gene expression modulation. Still, in response to the same abiotic stresses, some conserved miRNA families show different expression patterns in different plant species. In parallel, the use of deep sequencing technologies reveals new levels of complexity of regulatory networks in plants through identification of new miRNAs. Methods and results Fritillaria imperialis plants were collected from their natural habitats in Koohrang, Chaharmahal va Bakhtiari, Iran. Several tissues including stamen, pistil, petal, sepal, leaf, stem, bulb and fruit were collected during three developmental stages (stem elongation, flower development and seed head stages). Using RNAseq and qRT-PCR approach, this research revealed 21 conserved miRNAs, matching 15 miRNA families, in Fritilaria imperialis. Conclusions The expression of seven conserved miRNAs (Fim-miR156b, Fim-miR159, ...Fim-miR166a-5p, Fim-miR169d-5p, Fim-miR171c, Fim-miR393 and Fim-miR396e-3p) was further investigated in different tissues and three developmental stages, suggesting different roles for these miRNAs during growth and development of crown imperial. Gained knowledge from this research can open the door to find efficient ways to secure crown imperial survival, preservation and utilization and if proven useful may be applied in other plant species as well.
Keywords:
High-throughput sequencing / Development / Crown imperial / Conserved miRNASource:
Molecular Biology Reports, 2022, 49, 2, 1121-1132Publisher:
- Springer, Dordrecht
DOI: 10.1007/s11033-021-06938-1
ISSN: 0301-4851
PubMed: 34779986
WoS: 000718718100002
Scopus: 2-s2.0-85119011345
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Institut za molekularnu genetiku i genetičko inženjerstvoTY - JOUR AU - Ahmadi-Teshniz, Fereshteh AU - Shiran, Behrouz AU - Mousavi-Fard, Sadegh AU - Fallahi, Hossein AU - Banović Đeri, Bojana PY - 2022 UR - https://imagine.imgge.bg.ac.rs/handle/123456789/1549 AB - Background Novel strategies for improvement of ornamental plants and their properties relay on miRNA control of differential plant gene expression modulation. Still, in response to the same abiotic stresses, some conserved miRNA families show different expression patterns in different plant species. In parallel, the use of deep sequencing technologies reveals new levels of complexity of regulatory networks in plants through identification of new miRNAs. Methods and results Fritillaria imperialis plants were collected from their natural habitats in Koohrang, Chaharmahal va Bakhtiari, Iran. Several tissues including stamen, pistil, petal, sepal, leaf, stem, bulb and fruit were collected during three developmental stages (stem elongation, flower development and seed head stages). Using RNAseq and qRT-PCR approach, this research revealed 21 conserved miRNAs, matching 15 miRNA families, in Fritilaria imperialis. Conclusions The expression of seven conserved miRNAs (Fim-miR156b, Fim-miR159, Fim-miR166a-5p, Fim-miR169d-5p, Fim-miR171c, Fim-miR393 and Fim-miR396e-3p) was further investigated in different tissues and three developmental stages, suggesting different roles for these miRNAs during growth and development of crown imperial. Gained knowledge from this research can open the door to find efficient ways to secure crown imperial survival, preservation and utilization and if proven useful may be applied in other plant species as well. PB - Springer, Dordrecht T2 - Molecular Biology Reports T1 - Identification and profiling of conserved microRNAs in different developmental stages of crown imperial (Fritillaria imperialis L.) using high-throughput sequencing EP - 1132 IS - 2 SP - 1121 VL - 49 DO - 10.1007/s11033-021-06938-1 ER -
@article{ author = "Ahmadi-Teshniz, Fereshteh and Shiran, Behrouz and Mousavi-Fard, Sadegh and Fallahi, Hossein and Banović Đeri, Bojana", year = "2022", abstract = "Background Novel strategies for improvement of ornamental plants and their properties relay on miRNA control of differential plant gene expression modulation. Still, in response to the same abiotic stresses, some conserved miRNA families show different expression patterns in different plant species. In parallel, the use of deep sequencing technologies reveals new levels of complexity of regulatory networks in plants through identification of new miRNAs. Methods and results Fritillaria imperialis plants were collected from their natural habitats in Koohrang, Chaharmahal va Bakhtiari, Iran. Several tissues including stamen, pistil, petal, sepal, leaf, stem, bulb and fruit were collected during three developmental stages (stem elongation, flower development and seed head stages). Using RNAseq and qRT-PCR approach, this research revealed 21 conserved miRNAs, matching 15 miRNA families, in Fritilaria imperialis. Conclusions The expression of seven conserved miRNAs (Fim-miR156b, Fim-miR159, Fim-miR166a-5p, Fim-miR169d-5p, Fim-miR171c, Fim-miR393 and Fim-miR396e-3p) was further investigated in different tissues and three developmental stages, suggesting different roles for these miRNAs during growth and development of crown imperial. Gained knowledge from this research can open the door to find efficient ways to secure crown imperial survival, preservation and utilization and if proven useful may be applied in other plant species as well.", publisher = "Springer, Dordrecht", journal = "Molecular Biology Reports", title = "Identification and profiling of conserved microRNAs in different developmental stages of crown imperial (Fritillaria imperialis L.) using high-throughput sequencing", pages = "1132-1121", number = "2", volume = "49", doi = "10.1007/s11033-021-06938-1" }
Ahmadi-Teshniz, F., Shiran, B., Mousavi-Fard, S., Fallahi, H.,& Banović Đeri, B.. (2022). Identification and profiling of conserved microRNAs in different developmental stages of crown imperial (Fritillaria imperialis L.) using high-throughput sequencing. in Molecular Biology Reports Springer, Dordrecht., 49(2), 1121-1132. https://doi.org/10.1007/s11033-021-06938-1
Ahmadi-Teshniz F, Shiran B, Mousavi-Fard S, Fallahi H, Banović Đeri B. Identification and profiling of conserved microRNAs in different developmental stages of crown imperial (Fritillaria imperialis L.) using high-throughput sequencing. in Molecular Biology Reports. 2022;49(2):1121-1132. doi:10.1007/s11033-021-06938-1 .
Ahmadi-Teshniz, Fereshteh, Shiran, Behrouz, Mousavi-Fard, Sadegh, Fallahi, Hossein, Banović Đeri, Bojana, "Identification and profiling of conserved microRNAs in different developmental stages of crown imperial (Fritillaria imperialis L.) using high-throughput sequencing" in Molecular Biology Reports, 49, no. 2 (2022):1121-1132, https://doi.org/10.1007/s11033-021-06938-1 . .