Leaf transcriptome analysis of Lancaster versus other heterotic groups' maize inbred lines revealed different regulation of cold-responsive genes
Samo za registrovane korisnike
2022
Autori
Banović Đeri, BojanaBozić, Manja
Dudić, Dragana
Vicić, Ivan
Milivojević, Marija
Ignjatović-Micić, Dragana
Samardžić, Jelena
Vancetović, Jelena
Delić, Nenad
Nikolić, Ana
Članak u časopisu (Objavljena verzija)
Metapodaci
Prikaz svih podataka o dokumentuApstrakt
One of the strategies for overcoming global climate change threatening to decrease maize yield is early sowing. To contribute to the development of cold-tolerant hybrids this research focused on the genetic background's comparative analysis in maize inbreds with good combining ability. Leaf whole-transcriptome sequencing of 46 maize genotypes revealed 77 differentially expressed genes (DEGs) between Lancaster and other heterotic groups (i.e. BSSS, Iowa dent, Ohio), referred to as non-Lancaster group, under optimal growing conditions. Cold test of the subset of four Lancaster and four non-Lancaster lines showed that the former were cold sensitive and the latter cold tolerant. Cold-induced expression analysis of seven DEGs in eight lines revealed different expression regulation dependent on the duration of cold exposure and genetic background for six out of seven analysed genes-chloroplast ATP-sulphurylase, photosystem II cytochrome b559 alpha subunit, CIPK serine-threonine protein kinas...e 15, glutamyl-tRNA reductase, photosystem II reaction centre protein I and Calvin cycle CP12-chloroplastic-like encoding genes. The results imply that differently regulated basic processes between Lancaster and non-Lancaster maize group involve, at least, photosynthesis and sulphate assimilation, contributing to their different cold response and different adaptation to low temperatures.
Ključne reči:
transcriptomics / maize grain yield / low temperature / heterosisIzvor:
Journal of Agronomy and Crop Science, 2022, 208, 4, 497-509Izdavač:
- Wiley, Hoboken
Finansiranje / projekti:
- Ministarstvo nauke, tehnološkog razvoja i inovacija Republike Srbije, institucionalno finansiranje - 200042 (Univerzitet u Beogradu, Institut za molekularnu genetiku i genetičko inženjerstvo) (RS-MESTD-inst-2020-200042)
- Genetički resursi kukuruza kao izvor poboljšanog kvaliteta zrna i tolerantnosti prema suši (RS-MESTD-Technological Development (TD or TR)-31028)
DOI: 10.1111/jac.12529
ISSN: 0931-2250
WoS: 000667772300001
Scopus: 2-s2.0-85111077171
Institucija/grupa
Institut za molekularnu genetiku i genetičko inženjerstvoTY - JOUR AU - Banović Đeri, Bojana AU - Bozić, Manja AU - Dudić, Dragana AU - Vicić, Ivan AU - Milivojević, Marija AU - Ignjatović-Micić, Dragana AU - Samardžić, Jelena AU - Vancetović, Jelena AU - Delić, Nenad AU - Nikolić, Ana PY - 2022 UR - https://imagine.imgge.bg.ac.rs/handle/123456789/1576 AB - One of the strategies for overcoming global climate change threatening to decrease maize yield is early sowing. To contribute to the development of cold-tolerant hybrids this research focused on the genetic background's comparative analysis in maize inbreds with good combining ability. Leaf whole-transcriptome sequencing of 46 maize genotypes revealed 77 differentially expressed genes (DEGs) between Lancaster and other heterotic groups (i.e. BSSS, Iowa dent, Ohio), referred to as non-Lancaster group, under optimal growing conditions. Cold test of the subset of four Lancaster and four non-Lancaster lines showed that the former were cold sensitive and the latter cold tolerant. Cold-induced expression analysis of seven DEGs in eight lines revealed different expression regulation dependent on the duration of cold exposure and genetic background for six out of seven analysed genes-chloroplast ATP-sulphurylase, photosystem II cytochrome b559 alpha subunit, CIPK serine-threonine protein kinase 15, glutamyl-tRNA reductase, photosystem II reaction centre protein I and Calvin cycle CP12-chloroplastic-like encoding genes. The results imply that differently regulated basic processes between Lancaster and non-Lancaster maize group involve, at least, photosynthesis and sulphate assimilation, contributing to their different cold response and different adaptation to low temperatures. PB - Wiley, Hoboken T2 - Journal of Agronomy and Crop Science T1 - Leaf transcriptome analysis of Lancaster versus other heterotic groups' maize inbred lines revealed different regulation of cold-responsive genes EP - 509 IS - 4 SP - 497 VL - 208 DO - 10.1111/jac.12529 ER -
@article{ author = "Banović Đeri, Bojana and Bozić, Manja and Dudić, Dragana and Vicić, Ivan and Milivojević, Marija and Ignjatović-Micić, Dragana and Samardžić, Jelena and Vancetović, Jelena and Delić, Nenad and Nikolić, Ana", year = "2022", abstract = "One of the strategies for overcoming global climate change threatening to decrease maize yield is early sowing. To contribute to the development of cold-tolerant hybrids this research focused on the genetic background's comparative analysis in maize inbreds with good combining ability. Leaf whole-transcriptome sequencing of 46 maize genotypes revealed 77 differentially expressed genes (DEGs) between Lancaster and other heterotic groups (i.e. BSSS, Iowa dent, Ohio), referred to as non-Lancaster group, under optimal growing conditions. Cold test of the subset of four Lancaster and four non-Lancaster lines showed that the former were cold sensitive and the latter cold tolerant. Cold-induced expression analysis of seven DEGs in eight lines revealed different expression regulation dependent on the duration of cold exposure and genetic background for six out of seven analysed genes-chloroplast ATP-sulphurylase, photosystem II cytochrome b559 alpha subunit, CIPK serine-threonine protein kinase 15, glutamyl-tRNA reductase, photosystem II reaction centre protein I and Calvin cycle CP12-chloroplastic-like encoding genes. The results imply that differently regulated basic processes between Lancaster and non-Lancaster maize group involve, at least, photosynthesis and sulphate assimilation, contributing to their different cold response and different adaptation to low temperatures.", publisher = "Wiley, Hoboken", journal = "Journal of Agronomy and Crop Science", title = "Leaf transcriptome analysis of Lancaster versus other heterotic groups' maize inbred lines revealed different regulation of cold-responsive genes", pages = "509-497", number = "4", volume = "208", doi = "10.1111/jac.12529" }
Banović Đeri, B., Bozić, M., Dudić, D., Vicić, I., Milivojević, M., Ignjatović-Micić, D., Samardžić, J., Vancetović, J., Delić, N.,& Nikolić, A.. (2022). Leaf transcriptome analysis of Lancaster versus other heterotic groups' maize inbred lines revealed different regulation of cold-responsive genes. in Journal of Agronomy and Crop Science Wiley, Hoboken., 208(4), 497-509. https://doi.org/10.1111/jac.12529
Banović Đeri B, Bozić M, Dudić D, Vicić I, Milivojević M, Ignjatović-Micić D, Samardžić J, Vancetović J, Delić N, Nikolić A. Leaf transcriptome analysis of Lancaster versus other heterotic groups' maize inbred lines revealed different regulation of cold-responsive genes. in Journal of Agronomy and Crop Science. 2022;208(4):497-509. doi:10.1111/jac.12529 .
Banović Đeri, Bojana, Bozić, Manja, Dudić, Dragana, Vicić, Ivan, Milivojević, Marija, Ignjatović-Micić, Dragana, Samardžić, Jelena, Vancetović, Jelena, Delić, Nenad, Nikolić, Ana, "Leaf transcriptome analysis of Lancaster versus other heterotic groups' maize inbred lines revealed different regulation of cold-responsive genes" in Journal of Agronomy and Crop Science, 208, no. 4 (2022):497-509, https://doi.org/10.1111/jac.12529 . .