The gene regulation knowledge commons: the action area of GREEKC
Аутори
Kuiper, MartinBonello, Joseph
Fernández-Breis, Jesualdo T.
Bucher, Philipp
Futschik, Matthias E.
Gaudet, Pascale
Kulakovskiy, Ivan V.
Licata, Luana
Logie, Colin
Lovering, Ruth C.
Makeev, Vsevolod J.
Orchard, Sandra
Panni, Simona
Perfetto, Livia
Sant, David
Schulz, Stefan
Vercruysse, Steven
Zerbino, Daniel R.
Lægreid, Astrid
Чланак у часопису (Објављена верзија)
Метаподаци
Приказ свих података о документуАпстракт
As computational modeling becomes more essential to analyze and understand biological regulatory mechanisms, governance of the many databases and knowledge bases that support this domain is crucial to guarantee reliability and interoperability of resources. To address this, the COST Action Gene Regulation Ensemble Effort for the Knowledge Commons (GREEKC, CA15205, www.greekc.org) organized nine workshops in a four-year period, starting September 2016. The workshops brought together a wide range of experts from all over the world working on various steps in the knowledge management process that focuses on understanding gene regulatory mechanisms. The discussions between ontologists, curators, text miners, biologists, bioinformaticians, philosophers and computational scientists spawned a host of activities aimed to standardize and update existing knowledge management workflows and involve end-users in the process of designing the Gene Regulation Knowledge Commons (GRKC). Here the GREEKC ...consortium describes its main achievements in improving this GRKC.
Кључне речи:
Biocuration / Computational biology / Knowledge Commons / Ontologies / Text mining / Web servicesИзвор:
Biochimica et Biophysica Acta (BBA) - Gene Regulatory Mechanisms, 2022, 1865, 1, 194768-Финансирање / пројекти:
- COST (European Cooperation in Science and Technology)
- RCL has been supported by Alzheimer’s Research UK grant (ARUK-NAS2017A-1)
- National Institute for Health Research University College London Hospitals Biomedical Research Centre
- IVK was supported by RSF grant 20-74-10075. MEF was supported by national Portuguese funding through a developmental grant (IF/00881/ 2013) by the FCT (Fundaçao ˜ para a Ciˆencia e Tecnologia)
Институција/група
Institut za molekularnu genetiku i genetičko inženjerstvoTY - JOUR AU - Kuiper, Martin AU - Bonello, Joseph AU - Fernández-Breis, Jesualdo T. AU - Bucher, Philipp AU - Futschik, Matthias E. AU - Gaudet, Pascale AU - Kulakovskiy, Ivan V. AU - Licata, Luana AU - Logie, Colin AU - Lovering, Ruth C. AU - Makeev, Vsevolod J. AU - Orchard, Sandra AU - Panni, Simona AU - Perfetto, Livia AU - Sant, David AU - Schulz, Stefan AU - Vercruysse, Steven AU - Zerbino, Daniel R. AU - Lægreid, Astrid PY - 2022 UR - https://imagine.imgge.bg.ac.rs/handle/123456789/1648 AB - As computational modeling becomes more essential to analyze and understand biological regulatory mechanisms, governance of the many databases and knowledge bases that support this domain is crucial to guarantee reliability and interoperability of resources. To address this, the COST Action Gene Regulation Ensemble Effort for the Knowledge Commons (GREEKC, CA15205, www.greekc.org) organized nine workshops in a four-year period, starting September 2016. The workshops brought together a wide range of experts from all over the world working on various steps in the knowledge management process that focuses on understanding gene regulatory mechanisms. The discussions between ontologists, curators, text miners, biologists, bioinformaticians, philosophers and computational scientists spawned a host of activities aimed to standardize and update existing knowledge management workflows and involve end-users in the process of designing the Gene Regulation Knowledge Commons (GRKC). Here the GREEKC consortium describes its main achievements in improving this GRKC. T2 - Biochimica et Biophysica Acta (BBA) - Gene Regulatory Mechanisms T2 - Biochimica et Biophysica Acta (BBA) - Gene Regulatory MechanismsBiochimica et Biophysica Acta (BBA) - Gene Regulatory Mechanisms T1 - The gene regulation knowledge commons: the action area of GREEKC IS - 1 SP - 194768 VL - 1865 DO - 10.1016/j.bbagrm.2021.194768 ER -
@article{ author = "Kuiper, Martin and Bonello, Joseph and Fernández-Breis, Jesualdo T. and Bucher, Philipp and Futschik, Matthias E. and Gaudet, Pascale and Kulakovskiy, Ivan V. and Licata, Luana and Logie, Colin and Lovering, Ruth C. and Makeev, Vsevolod J. and Orchard, Sandra and Panni, Simona and Perfetto, Livia and Sant, David and Schulz, Stefan and Vercruysse, Steven and Zerbino, Daniel R. and Lægreid, Astrid", year = "2022", abstract = "As computational modeling becomes more essential to analyze and understand biological regulatory mechanisms, governance of the many databases and knowledge bases that support this domain is crucial to guarantee reliability and interoperability of resources. To address this, the COST Action Gene Regulation Ensemble Effort for the Knowledge Commons (GREEKC, CA15205, www.greekc.org) organized nine workshops in a four-year period, starting September 2016. The workshops brought together a wide range of experts from all over the world working on various steps in the knowledge management process that focuses on understanding gene regulatory mechanisms. The discussions between ontologists, curators, text miners, biologists, bioinformaticians, philosophers and computational scientists spawned a host of activities aimed to standardize and update existing knowledge management workflows and involve end-users in the process of designing the Gene Regulation Knowledge Commons (GRKC). Here the GREEKC consortium describes its main achievements in improving this GRKC.", journal = "Biochimica et Biophysica Acta (BBA) - Gene Regulatory Mechanisms, Biochimica et Biophysica Acta (BBA) - Gene Regulatory MechanismsBiochimica et Biophysica Acta (BBA) - Gene Regulatory Mechanisms", title = "The gene regulation knowledge commons: the action area of GREEKC", number = "1", pages = "194768", volume = "1865", doi = "10.1016/j.bbagrm.2021.194768" }
Kuiper, M., Bonello, J., Fernández-Breis, J. T., Bucher, P., Futschik, M. E., Gaudet, P., Kulakovskiy, I. V., Licata, L., Logie, C., Lovering, R. C., Makeev, V. J., Orchard, S., Panni, S., Perfetto, L., Sant, D., Schulz, S., Vercruysse, S., Zerbino, D. R.,& Lægreid, A.. (2022). The gene regulation knowledge commons: the action area of GREEKC. in Biochimica et Biophysica Acta (BBA) - Gene Regulatory Mechanisms, 1865(1), 194768. https://doi.org/10.1016/j.bbagrm.2021.194768
Kuiper M, Bonello J, Fernández-Breis JT, Bucher P, Futschik ME, Gaudet P, Kulakovskiy IV, Licata L, Logie C, Lovering RC, Makeev VJ, Orchard S, Panni S, Perfetto L, Sant D, Schulz S, Vercruysse S, Zerbino DR, Lægreid A. The gene regulation knowledge commons: the action area of GREEKC. in Biochimica et Biophysica Acta (BBA) - Gene Regulatory Mechanisms. 2022;1865(1):194768. doi:10.1016/j.bbagrm.2021.194768 .
Kuiper, Martin, Bonello, Joseph, Fernández-Breis, Jesualdo T., Bucher, Philipp, Futschik, Matthias E., Gaudet, Pascale, Kulakovskiy, Ivan V., Licata, Luana, Logie, Colin, Lovering, Ruth C., Makeev, Vsevolod J., Orchard, Sandra, Panni, Simona, Perfetto, Livia, Sant, David, Schulz, Stefan, Vercruysse, Steven, Zerbino, Daniel R., Lægreid, Astrid, "The gene regulation knowledge commons: the action area of GREEKC" in Biochimica et Biophysica Acta (BBA) - Gene Regulatory Mechanisms, 1865, no. 1 (2022):194768, https://doi.org/10.1016/j.bbagrm.2021.194768 . .