Metagenomic Analysis of Bacterial Community and Isolation of Representative Strains from Vranjska Banja Hot Spring, Serbia
Аутори
Curčić, JovanaMatijasević, Danka
Stanisavljević, Nemanja
Tasić, Srđan
Kojić, Milan
Malešević, Milka
Остала ауторства
Morić, IvanaĐorđević, Valentina
Конференцијски прилог (Објављена верзија)
,
© 2023 Institute of Molecular Genetics and Genetic Engineering, University of Belgrade
Метаподаци
Приказ свих података о документуАпстракт
Thermal springs represent a habitat with extreme conditions that harbor a unique
microbial community adapted to thrive in this environment. In addition to the geothermal
springs in Iceland, the thermal springs of Vranjska Banja are considered the hottest in
Europe with a water temperature of 63-95°C. Due to global warming and climate change,
there is a growing need for knowledge about the biodiversity of extreme natural habitats.
Besides the exceptional importance of studying extremophilic microorganisms, the
difficulty in their cultivation limits the expanding necessity of research in this field. This
study provides information about the microbial community structure and physicochemical
characteristics of the thermal spring of Vranjska Banja. To determine and monitor the
microbiota diversity of the Vranjska Banja hot spring, for the first time, comprehensive
culture-independent metagenomic analysis in parallel with a culture-dependent
approach was applied. The culture-indep...endent composition of bacterial communities of
the thermal water was investigated using MiSeq-Illumina technology and analyzed by
the computing environment QIIME2 v2021. The applied cultivation approach resulted
in the isolation of 17 strains belonging to genera Bacillus, Anoxybacillus, Hydrogenophilus,
and Geobacillus, based on 16S rRNA sequencing and whole genome sequencing of five
representative strains has been performed. The complete DNA was sequenced using
Illumina HiSeq from the MicrobesNG service. Genomic characterization and OrthoANI
analysis have shown that two of them are candidates for novel species. Products of
extremophilic microorganisms adapted to harsh conditions have great potential to be
used for biotechnological research and industrial application. Results of BAGEL4 and
AntiSMASH showed that the sequenced strains from Vranjska Banja hot spring have
the potential to produce thermostable enzymes (proteases, lipases, amylases, phytase,
chitinase, and glucanase) and various antimicrobial molecules.
Кључне речи:
16S rRNA Metagenomic analysis / genome analysis / thermophilic bacterial diversity / hot spring / enzymatic potential / antimicrobial moleculesИзвор:
4th Belgrade Bioinformatics Conference, 2023, 4, 112-112Издавач:
- Belgrade : Institute of molecular genetics and genetic engineering
Напомена:
- Book of abstract: 4th Belgrade Bioinformatics Conference, June 19-23, 2023
Колекције
Институција/група
Institut za molekularnu genetiku i genetičko inženjerstvoTY - CONF AU - Curčić, Jovana AU - Matijasević, Danka AU - Stanisavljević, Nemanja AU - Tasić, Srđan AU - Kojić, Milan AU - Malešević, Milka PY - 2023 UR - https://belbi.bg.ac.rs/ UR - https://imagine.imgge.bg.ac.rs/handle/123456789/2057 AB - Thermal springs represent a habitat with extreme conditions that harbor a unique microbial community adapted to thrive in this environment. In addition to the geothermal springs in Iceland, the thermal springs of Vranjska Banja are considered the hottest in Europe with a water temperature of 63-95°C. Due to global warming and climate change, there is a growing need for knowledge about the biodiversity of extreme natural habitats. Besides the exceptional importance of studying extremophilic microorganisms, the difficulty in their cultivation limits the expanding necessity of research in this field. This study provides information about the microbial community structure and physicochemical characteristics of the thermal spring of Vranjska Banja. To determine and monitor the microbiota diversity of the Vranjska Banja hot spring, for the first time, comprehensive culture-independent metagenomic analysis in parallel with a culture-dependent approach was applied. The culture-independent composition of bacterial communities of the thermal water was investigated using MiSeq-Illumina technology and analyzed by the computing environment QIIME2 v2021. The applied cultivation approach resulted in the isolation of 17 strains belonging to genera Bacillus, Anoxybacillus, Hydrogenophilus, and Geobacillus, based on 16S rRNA sequencing and whole genome sequencing of five representative strains has been performed. The complete DNA was sequenced using Illumina HiSeq from the MicrobesNG service. Genomic characterization and OrthoANI analysis have shown that two of them are candidates for novel species. Products of extremophilic microorganisms adapted to harsh conditions have great potential to be used for biotechnological research and industrial application. Results of BAGEL4 and AntiSMASH showed that the sequenced strains from Vranjska Banja hot spring have the potential to produce thermostable enzymes (proteases, lipases, amylases, phytase, chitinase, and glucanase) and various antimicrobial molecules. PB - Belgrade : Institute of molecular genetics and genetic engineering C3 - 4th Belgrade Bioinformatics Conference T1 - Metagenomic Analysis of Bacterial Community and Isolation of Representative Strains from Vranjska Banja Hot Spring, Serbia EP - 112 SP - 112 VL - 4 UR - https://hdl.handle.net/21.15107/rcub_imagine_2057 ER -
@conference{ author = "Curčić, Jovana and Matijasević, Danka and Stanisavljević, Nemanja and Tasić, Srđan and Kojić, Milan and Malešević, Milka", year = "2023", abstract = "Thermal springs represent a habitat with extreme conditions that harbor a unique microbial community adapted to thrive in this environment. In addition to the geothermal springs in Iceland, the thermal springs of Vranjska Banja are considered the hottest in Europe with a water temperature of 63-95°C. Due to global warming and climate change, there is a growing need for knowledge about the biodiversity of extreme natural habitats. Besides the exceptional importance of studying extremophilic microorganisms, the difficulty in their cultivation limits the expanding necessity of research in this field. This study provides information about the microbial community structure and physicochemical characteristics of the thermal spring of Vranjska Banja. To determine and monitor the microbiota diversity of the Vranjska Banja hot spring, for the first time, comprehensive culture-independent metagenomic analysis in parallel with a culture-dependent approach was applied. The culture-independent composition of bacterial communities of the thermal water was investigated using MiSeq-Illumina technology and analyzed by the computing environment QIIME2 v2021. The applied cultivation approach resulted in the isolation of 17 strains belonging to genera Bacillus, Anoxybacillus, Hydrogenophilus, and Geobacillus, based on 16S rRNA sequencing and whole genome sequencing of five representative strains has been performed. The complete DNA was sequenced using Illumina HiSeq from the MicrobesNG service. Genomic characterization and OrthoANI analysis have shown that two of them are candidates for novel species. Products of extremophilic microorganisms adapted to harsh conditions have great potential to be used for biotechnological research and industrial application. Results of BAGEL4 and AntiSMASH showed that the sequenced strains from Vranjska Banja hot spring have the potential to produce thermostable enzymes (proteases, lipases, amylases, phytase, chitinase, and glucanase) and various antimicrobial molecules.", publisher = "Belgrade : Institute of molecular genetics and genetic engineering", journal = "4th Belgrade Bioinformatics Conference", title = "Metagenomic Analysis of Bacterial Community and Isolation of Representative Strains from Vranjska Banja Hot Spring, Serbia", pages = "112-112", volume = "4", url = "https://hdl.handle.net/21.15107/rcub_imagine_2057" }
Curčić, J., Matijasević, D., Stanisavljević, N., Tasić, S., Kojić, M.,& Malešević, M.. (2023). Metagenomic Analysis of Bacterial Community and Isolation of Representative Strains from Vranjska Banja Hot Spring, Serbia. in 4th Belgrade Bioinformatics Conference Belgrade : Institute of molecular genetics and genetic engineering., 4, 112-112. https://hdl.handle.net/21.15107/rcub_imagine_2057
Curčić J, Matijasević D, Stanisavljević N, Tasić S, Kojić M, Malešević M. Metagenomic Analysis of Bacterial Community and Isolation of Representative Strains from Vranjska Banja Hot Spring, Serbia. in 4th Belgrade Bioinformatics Conference. 2023;4:112-112. https://hdl.handle.net/21.15107/rcub_imagine_2057 .
Curčić, Jovana, Matijasević, Danka, Stanisavljević, Nemanja, Tasić, Srđan, Kojić, Milan, Malešević, Milka, "Metagenomic Analysis of Bacterial Community and Isolation of Representative Strains from Vranjska Banja Hot Spring, Serbia" in 4th Belgrade Bioinformatics Conference, 4 (2023):112-112, https://hdl.handle.net/21.15107/rcub_imagine_2057 .